I tried the same thing with my Avantgardes Amfibius - actually - there is a REVERSE switch in the subwoofer so you can try it on the fly and learn fro the experience.
At the beginning, the sound is "different" but ended up to normal settings after some weeks of experimenting.
I would suggest you to try different speaker localtions in order to set the bass driver at its best, worked with my speakers.
Cheers,
Fernando